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Importing

Bring an .h5ad into PointillViz: the import wizard maps its fields onto the viewer and converts it.

Tutorial in preparation

This tutorial is being written. The outline below shows what it will cover.

The import wizard at its Map fields step: the Spatial panel set to 2D spatial, with the spatial obsm key and pixel units, and the Cells panel with a cell-type column of 73 types, an automatic palette and the hierarchy options.
Map fields, the wizard’s second step: where the cells sit, in which units, and which column holds their types.Xenium 5K · mouse colon · 135,232 cells
On this page5
  1. What you need
  2. Upload a file or point to one
  3. Map fields onto the viewer
  4. Convert and open
  5. From the command line

What you need

Upload a file or point to one

Map fields onto the viewer

Convert and open

From the command line